Mar 14, 2022 · I've been trying to analyse 10X Multiome data of rat cells. Samples seem to process fine, I can cluster cells and create UMAPs and ...

R toolkit for the analysis of single-cell chromatin data - Issues · stuart-lab/signac.

Sep 7, 2020 · Hi,. I'm getting the following error when trying to read in the fragments.tsv.gz file. Error: Can't extract columns that don't exist.

Oct 12, 2020 · Hi all, The monkey ATAC data. The tssenrichment showing different between the cellranger-atac and signac1.1.0, The picture showing below,

Sep 8, 2020 · Is there any way to bypass this error or computing q value? I can compute adjusted p-value later after I get all the motif enrichment results.

Nov 19, 2020 · After updating to Signac 1.1 and performing the pfm <- getMatrixSet step in the Motif analysis vignette, when I attempt to #add motif ...

Mar 10, 2022 · Hi, Here is my code: CoveragePlot( object = my.atac, region = 15-20220000-20229000', links = TRUE, extend.upstream = 20000, ...

Sep 17, 2020 · Hello, Great package. I am running Signac on my data, and am running into an issue at the TSSEnrichment step. When running the function, ...